Genetic Engineering Publications - GEG Tech top picks
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Engineered human hepatocyte organoids enable CRISPR-based target discovery and drug screening for steatosis | Nature Biotechnology

Engineered human hepatocyte organoids enable CRISPR-based target discovery and drug screening for steatosis | Nature Biotechnology | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
The lack of registered drugs for nonalcoholic fatty liver disease (NAFLD) is partly due to the paucity of human-relevant models for target discovery and compound screening. Here we use human fetal hepatocyte organoids to model the first stage of NAFLD, steatosis, representing three different triggers: free fatty acid loading, interindividual genetic variability (PNPLA3 I148M) and monogenic lipid disorders (APOB and MTTP mutations). Screening of drug candidates revealed compounds effective at resolving steatosis. Mechanistic evaluation of effective drugs uncovered repression of de novo lipogenesis as the convergent molecular pathway. We present FatTracer, a CRISPR screening platform to identify steatosis modulators and putative targets using APOB−/− and MTTP−/− organoids. From a screen targeting 35 genes implicated in lipid metabolism and/or NAFLD risk, FADS2 (fatty acid desaturase 2) emerged as an important determinant of hepatic steatosis. Enhancement of FADS2 expression increases polyunsaturated fatty acid abundancy which, in turn, reduces de novo lipogenesis. These organoid models facilitate study of steatosis etiology and drug targets. Organoid models of early liver disease aid target discovery and drug screening.
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The accumulation of fat in the liver is an increasingly common disease worldwide, with more than a quarter of the world's population affected. Various causes can lead to the development of fatty liver, with diet and lifestyle being the most common contributors. There is currently no treatment for fatty liver that can stop or reverse the disease. Therefore, researchers have established new human organoid models of fatty liver. They used these models to shed light on drug responses and established a CRISPR screening platform, called FatTracer, to identify new disease mediators and potential therapeutic targets. After screening 35 candidates, a critical new role for the FADS2 (fatty acid desaturase 2) gene in fatty liver disease was discovered. Disruption of FADS2 made the organoids much fatter. Upon overexpression of FADS2, the hepatic steatosis that the organoids once displayed was severely reduced. These models will therefore help test and develop new drugs to treat hepatic steatosis and better understand the biology of the disease. The results of the study will be published in Nature Biotechnology.

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Brain waves detected in mini-brains grown in a dish

Brain waves detected in mini-brains grown in a dish | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development
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Scientists have created miniature brains from stem cells that developed functional neural networks. Despite being a million times smaller than human brains, these lab-grown brains are the first observed to produce brain waves that resemble those of preterm babies.

The study, published August 29 in the journal Cell Stem Cell, could help scientists better understand human brain development.

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Drug Discovery via Human-Derived Stem Cell Organoids

Drug Discovery via Human-Derived Stem Cell Organoids | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Here, the authors discuss how patient-derived organoids should be grown and how advanced genome-editing tools may be applied to research on modeling of cancer and infectious diseases. They also highlight practical applications of organoids ranging from basic studies to drug screening and precision medicine.

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Researchers take new approach to studying the development of the human brain

Researchers take new approach to studying the development of the human brain | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
Researchers at ETH Zurich are growing human brain-​like tissue from stem cells and are then mapping the cell types that occur in different brain regions and the genes that regulate their development.
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A group of researchers has taken a new approach to studying human brain development: they are growing and using organoids, three-dimensional millimeter-sized tissues that can be grown from what are called pluripotent stem cells. Research on organoids made of human cellular material has the advantage that the results are transferable to humans. In a new study just published in Nature, its researchers have now studied thousands of individual cells in a brain organoid at different times and in great detail. The goal of this study was to systematically identify genetic switches that have a significant impact on the development of neurons in different regions of brain organoids. Using a CRISPR-Cas9 system, the researchers selectively turned off one gene in each cell, for a total of about two dozen genes simultaneously throughout the organoid. This allowed them to discover what role the respective genes played in the development of the brain organoid. 

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CRISPR/Cas 9 genome editing and its applications in organoids

CRISPR/Cas 9 genome editing and its applications in organoids | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Organoids are 3D structures derived from adult or embryonic stem cells that maintain many structural and functional features of their respective organ. Recently, genome editing based on the bacterial defense mechanism CRISPR/Cas9 has emerged as an easily applicable and reliable lab tool. Combining organoids and CRISPR/Cas9 creates exciting new opportunities to study organ development and human disease in vitro. The potential applications of CRISPR in organoids are only beginning to be explored.

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Efficient genetic engineering of human intestinal organoids using electroporation - Nature Protocols

Efficient genetic engineering of human intestinal organoids using electroporation - Nature Protocols | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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This protocol describes how to grow untransformed human colonic organoids and deliver genes of interest into the organoids via the piggyBac transposon or gene editing using the CRISPR-Cas9 system.


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