Genetic Engineering Publications - GEG Tech top picks
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Pooled CRISPR screening with single-cell transcriptome readout - Nature Methods 

Pooled CRISPR screening with single-cell transcriptome readout - Nature Methods  | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
CROP-seq enables pooled CRISPR screens for complex transcriptome signatures by making gRNA expression detectable in single-cell RNA sequencing.
BigField GEG Tech's insight:

The method describes CRISPR droplet sequencing (CROP-seq) enables pooled CRISPR screens with single-cell transcriptome resolution, which will facilitate high-throughput functional dissection of complex regulatory mechanisms and heterogeneous cell populations.

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Genome-wide specificity of DNA-binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

Genome-wide specificity of DNA-binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators | Genetic Engineering Publications - GEG Tech top picks | Scoop.it



BigField GEG Tech's insight:

The authors analyzed the genome-wide effects of TALE- and CRISPR-based transcriptional activators in human cells. Their results show that these transcription factors are highly specific in both DNA-binding and gene regulation, and are able to open targeted regions of closed chromatin independent of gene activation. Collectively, these results underscore the potential for these technologies to make precise changes to gene expression for gene and cell therapies or fundamental studies of gene function.


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Pooled CRISPR screening with single-cell transcriptome read-out

Pooled CRISPR screening with single-cell transcriptome read-out | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
BigField GEG Tech's insight:

Here the scientists demonstrate CRISPR genome editing together with single-cell RNA sequencing as a new screening paradigm that combines key advantages of pooled and arrayed screens. This approach allowed to link guide-RNA expression to the associated transcriptome responses in thousands of single cells using a straightforward and broadly applicable screening workflow.

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G&T-seq: parallel sequencing of single-cell genomes and transcriptomes - Nature Methods

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes - Nature Methods | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
BigField GEG Tech's insight:

The simultaneous sequencing of a single cell's genome and transcriptome offers a powerful means to dissect genetic variation and its effect on gene expression.


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