Genetic Engineering Publications - GEG Tech top picks
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Off-target effects of engineered nucleases 

Off-target effects of engineered nucleases  | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Recent advances in gene editing with engineered nucleases have transformed our ability to manipulate the genome from diverse organisms for applications ranging from biomedical research to disease treatment. A major complication of use is the off-target of these engineered nucleases which is followed by DNA repair using normal cellular DNA repair mechanisms and which causes gene mutation or gross chromosome rearrangement. Here the authors reviewed developments will enable gene editing tools to be applied more broadly and safely in basic research and disease treatment.

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Molecular Therapy - Abstract of article: Nuclease Target Site Selection for Maximizing On-target Activity and Minimizing Off-target Effects in Genome Editing

Molecular Therapy - Abstract of article: Nuclease Target Site Selection for Maximizing On-target Activity and Minimizing Off-target Effects in Genome Editing | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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Here, the authors review the various tools available for target selection in designing engineered nucleases, and for quantifying nuclease activity and specificity, including web-based search tools and experimental methods. They also elucidate challenges in target selection, especially in predicting off-target effects, and discuss future directions in precision genome editing and its applications.

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Optimized tuning of TALEN specificity using non-conventional RVDs - Scientific Reports

Optimized tuning of TALEN specificity using non-conventional RVDs - Scientific Reports | Genetic Engineering Publications - GEG Tech top picks | Scoop.it



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In this study, the scientists identified and characterized new non-conventional RVDs (ncRVDs) that possess novel intrinsic targeting specificity features. By implementing such ncRVDs, they demonstrated in living cells the possibility to efficiently promote TALEN-mediated processing of a target in the HBB locus and alleviate undesired off-site cleavage.


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Off-target effects of engineered nucleases

Off-target effects of engineered nucleases | Genetic Engineering Publications - GEG Tech top picks | Scoop.it

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BigField GEG Tech's insight:

A major complication with genome editing toolss is the binding of the nuclease to unintended genomic sites that share sequence homology with the on-target site. Here the authors reviewed the significant progress has been made recently to boost the nuclease targeting specificity by protein engineering to modify the structure of the nuclease and alter the interaction with its genomic target.

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In vivo genome editing using Staphylococcus aureus Cas9 - Nature

In vivo genome editing using Staphylococcus aureus Cas9 - Nature | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
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The authors identified new cas9 highly efficient for in vivo genome editing.


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Off-target assessment of CRISPR-cas9 guiding RNAs in human iPS and mouse ES cells

Off-target assessment of CRISPR-cas9 guiding RNAs in human iPS and mouse ES cells | Genetic Engineering Publications - GEG Tech top picks | Scoop.it
BigField GEG Tech's insight:

The authors analysed the Cas9 cutting activity of 12 gRNAs in both their targeted sites and ∼90 predicted off-target sites per gRNA. Their conclusion is that off-target activity of Cas9 is low and predictable by the degree of sequence identity between the gRNA and a potential off-target site. Off-target Cas9 activity can be minimized by selecting gRNAs with few off-target sites of near-complementarity.


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