"Brain scans reveal that when participants are engaged in moral reasoning, there is significant activation in areas crucial to emotional processing (a circuit running from the frontal lobes to the limbic system)."
Via Sarantis Chelmis
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The cingulate cortex mediates the conflict between the emotional and the rational components of moral reasoning. Other important structures contributing to moral behaviour include the subcortical nuclei such as the amygdala ... Via Sarantis Chelmis 
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